A javascript implementation of the non-central version of Fisher’s exact test

In a previous post, I presented a case for choosing a non-central version of Fisher's exact test for most of bioinformatics' uses of this test. I will now present an implementation of this test in javascript that could easily be embedded in web interfaces. Although javascript is probably the least likely language to implement statistical methods, I hope this article will fill in as many details as possible to make it trivial to port it to other languages if the need arises. At [...]

By | January 13, 2017|Categories: Statistics, Test|0 Comments

Fast network transfers?

Recently, everyone and their mother started using various tools in order to optimize large data transfer to, from and between supercomputers. Historically, we have seen tools like FDT, BBCP that tried to exceed the performance obtained from other transfer methods, like scp, rsync, ftp, etc. One tool in particular is now gaining traction and is being deployed on most supercomputers: GridFTP and its front-end Globus. The Globus frontend interface. Before jumping into the bandwagon, I thought it would [...]

By | October 13, 2016|Categories: Computer science, Performance, Test|0 Comments