A command-line tool developed to rank best Predictive Gene (PG) to improve the detection of biomarker. To achieve this, EPCY will evaluate potential predictive of each gene expression.


Links: Git, PyPI, Docs

A command-line tool developed to identify and quantify single nucleotide variants, insertions, deletions, and duplications from RNA-seq data.


Links: Git

Integrative software package designed to provide an interface to view and interrogate large datasets including data derived from sequencing, clinical files, and chemical compound responses.


  • MiSTIC, an integrated platform for the analysis of heterogeneity in large tumour transcriptome datasets. Nucleic Acids Res. 2017, https://doi.org/10.1093/nar/gkx338, PMID: 28472340

Links: Git, Public version, Demo