A command-line tool developed to rank best Predictive Gene (PG) to improve the detection of biomarker. To achieve this, EPCY will evaluate potential predictive of each gene expression.
Publication:
- EPCY: Evaluation of Predictive CapabilitY for ranking biomarker gene candidates. Poster at ISMB ECCB 2019: https://f1000research.com/posters/8-1349
A command-line tool developed to identify and quantify single nucleotide variants, insertions, deletions, and duplications from RNA-seq data.
Publications:
- Targeted variant detection using unaligned RNA-Seq reads. Life science Alliance 2019 Aug 19;2(4); doi: https://doi.org/10.26508/lsa.201900336
- Target variant detection in leukemia using unaligned RNA-Seq reads. bioRxiv 295808; doi: https://doi.org/10.1101/295808
Links: Git
Integrative software package designed to provide an interface to view and interrogate large datasets including data derived from sequencing, clinical files, and chemical compound responses.
Publication:
- MiSTIC, an integrated platform for the analysis of heterogeneity in large tumour transcriptome datasets. Nucleic Acids Res. 2017, https://doi.org/10.1093/nar/gkx338, PMID: 28472340
Links: Git, Public version, Demo